magistrsko delo
Abstract
Mikoplazme so najmanjši in najpreprostejši prokarionti, ki pogosto okužijo celične kulture v laboratoriju in vplivajo na fiziologijo in metabolizem evkariontskih celic. Z različnimi testi, ki so vključevali PCR, barvanje DNA in komercialne teste, smo preverili prisotnost mikoplazem v celičnih kulturah v našem laboratoriju. Izkazalo se je, da je kar nekaj najpogosteje uporabljenih celičnih linij okuženih z mikoplazmami. Ker nas je zanimalo, s katero vrsto mikoplazem so okužene, smo pomnoženo zaporedje ribosomalne DNA mikoplazem sekvencirali in primerjali s sekvencami že znanih mikoplazem. Ugotovili smo, da so preverjene celične kulture okužene z Mycoplasma hyorhinis. Mikoplazme smo iz okuženih kultur poskusili odstraniti z dodatkom antibiotika gentamicina, ki smo ga dodali v visoki koncentraciji direktno v celično gojišče, vendar so celice ostale okužene, saj je M. hyorhinis nanj verjetno odporna. Za najbolj uporabno metodo detekcije mikoplazem v celičnih kulturah se je izkazala verižna reakcija s polimerazo, saj je bila najbolj zanesljiva in cenovno primerna, hkrati pa preprosta in primerna za analizo več vzorcev naenkrat.
Keywords
mikoplazme;Mollicutes;celične linije;celične kulture;okužba;testiranje okuženosti;Mycoplasma hyorhinis;PCR;Hoechst 33342;sekvenciranje;zdravljenje;okužene linije;
Data
Language: |
Slovenian |
Year of publishing: |
2020 |
Typology: |
2.09 - Master's Thesis |
Organization: |
UL BF - Biotechnical Faculty |
Publisher: |
[T. Poljanšek] |
UDC: |
602.3:579.887:576.32/.36:579.24:57.086(043.2) |
COBISS: |
18059779
|
Views: |
524 |
Downloads: |
149 |
Average score: |
0 (0 votes) |
Metadata: |
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Other data
Secondary language: |
English |
Secondary title: |
Comparison of tests for mycoplasma detection in cell cultures |
Secondary abstract: |
Mycoplasmas are the smallest and simplest prokaryotes, which often infect cell cultures in laboratories and have an effect on their physiology and metabolism. We used different tests, including PCR, DNA staining and commercial kits, to inspect our cell cultures for mycoplasma contamination. We have shown, that some of our most frequently used cell cultures are contaminated with mycoplasmas. To find out the species of contaminating mycoplasmas, we used sequencing and compared our sequence to known species. All checked cell cultures were contaminated with Mycoplasma hyorhinis. To eradicate the contamination, we added antibiotic gentamycin in high concentration directly to the cell medium, but the cells remained mycoplasma contaminated, probably due to antibiotic resistance. The Polymerase chain reaction turned out to be the most useful method for detection of mycoplasmas in cell culture because of its reliability, price, simplicity and possibility of analysing more samples at the same time. |
Secondary keywords: |
mycoplasma;cell lines;cell cultures;mycoplasma contamination;contamination detection;sequencing;elimination treatments; |
Type (COBISS): |
Master's thesis/paper |
Study programme: |
0 |
Embargo end date (OpenAIRE): |
1970-01-01 |
Thesis comment: |
Univ. v Ljubljani, Biotehniška fak., Študij biotehnologije |
Pages: |
X, 57 f., [4] f. pril. |
ID: |
11411832 |