open-source, platform-independent, community-supported software for describing and comparing microbial communities
Patrick D. Schloss (Avtor), Sarah L. Westcott (Avtor), Thomas Ryabin (Avtor), Justine R. Hall (Avtor), Martin Hartmann (Avtor), Emily B. Hollister (Avtor), Ryan A. Lesniewski (Avtor), Brian B. Oakley (Avtor), Donovan H. Parks (Avtor), Courtney J. Robinson (Avtor), Jason W. Sahl (Avtor), Blaž Stres (Avtor), Gerhard G. Thallinger (Avtor), David J. van Horn (Avtor), Caroly F. Weber (Avtor)

Povzetek

Mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur totrim, screen, and align sequences, calculate distances, assign sequences to OTUs, and describe that alfa-and ß-diversity of eight marine samples previously characterized by pyrpsequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 hours using laptop computer.

Ključne besede

mikrobiologija;mikrobne združbe;bioinformatika;mothur;

Podatki

Jezik: Angleški jezik
Leto izida:
Tipologija: 1.01 - Izvirni znanstveni članek
Organizacija: UL BF - Biotehniška fakulteta
UDK: 579
COBISS: 2517640 Povezava se bo odprla v novem oknu
ISSN: 0099-2240
Št. ogledov: 1633
Št. prenosov: 303
Ocena: 0 (0 glasov)
Metapodatki: JSON JSON-RDF JSON-LD TURTLE N-TRIPLES XML RDFA MICRODATA DC-XML DC-RDF RDF

Ostali podatki

Sekundarni jezik: Neznan jezik
Vrsta dela (COBISS): Delo ni kategorizirano
Strani: str. 7537-7541
Letnik: ǂNo. ǂ23
Zvezek: ǂVol. ǂ75
Čas izdaje: 2009
DOI: 10.1128/AEM.0541-09
ID: 1033685
Priporočena dela:
, open-source, platform-independent, community-supported software for describing and comparing microbial communities
, ni podatka o podnaslovu
, doktorska disertacija
, ǂthe ǂsecret to success
, magistrsko delo