Ante Turudić (Avtor), Zlatko Liber (Avtor), Martina Grdiša (Avtor), Jernej Jakše (Avtor), Filip Varga (Avtor), Zlatko Šatović (Avtor)

Povzetek

With the development of next-generation sequencing technology and bioinformatics tools, the process of assembling DNA sequences has become cheaper and easier, especially in the case of much shorter organelle genomes. The number of available DNA sequences of complete chloroplast genomes in public genetic databases is constantly increasing and the data are widely used in plant phylogenetic and biotechnological research. In this work, we investigated possible inconsistencies in the stored form of publicly available chloroplast genome sequence data. The impact of these inconsistencies on the results of the phylogenetic analysis was investigated and the bioinformatic solution to identify and correct inconsistencies was implemented. The whole procedure was demonstrated using five plant families (Apiaceae, Asteraceae, Campanulaceae, Lamiaceae and Rosaceae) as examples.

Ključne besede

bioinformatika;kloroplasti;genom;sekvenciranje genoma;filogenetske analize;filogenetske metode;

Podatki

Jezik: Angleški jezik
Leto izida:
Tipologija: 1.01 - Izvirni znanstveni članek
Organizacija: UL BF - Biotehniška fakulteta
UDK: 602
COBISS: 69203459 Povezava se bo odprla v novem oknu
ISSN: 2223-7747
Št. ogledov: 120
Št. prenosov: 46
Ocena: 0 (0 glasov)
Metapodatki: JSON JSON-RDF JSON-LD TURTLE N-TRIPLES XML RDFA MICRODATA DC-XML DC-RDF RDF

Ostali podatki

Sekundarni jezik: Slovenski jezik
Sekundarne ključne besede: bioinformatika;kloroplasti;genom;sekvenciranje genoma;filogenetske analize;filogenetske metode;
Vrsta dela (COBISS): Članek v reviji
Strani: str. 1-14
Letnik: ǂVol. ǂ10
Zvezek: ǂno. ǂ7 (1360)
Čas izdaje: 2021
DOI: 10.3390/plants10071360
ID: 14889985