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Št. zadetkov: 7
Revisiting the role of transcription factors in coordinating the defense response against citrus bark cracking viroid infection in commercial hop (Humulus Lupulus L.)
Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, Jaroslav Matoušek, Jernej Jakše
Izvirni znanstveni članek
Oznake: genetske transformacije;viroid razpokanosti skorje agrumov;CBCVd;huda viroidna zakrnelost hmelja;humulus lupulus;hmelj;transkriptomska analiza;različno izraženi geni;
Transcription factors (TFs) play a major role in controlling gene expression by intricately regulating diverse biological processes such as growth and development, the response to external stimuli and the activation of defense responses. The systematic identification and classification of TF genes a ...
Leto: 2019 Vir: Biotehniška fakulteta (UL BF)
Evaluation of Disease Severity and Global Transcriptome response Induced by Citrus bark cracking viroid, Hop latent viroid, and their co-infection in hop (Humulus lupulus L.)
Nataša Štajner, Sebastjan Radišek, Ajay Kumar Mishra, Vishnu Sukumari Nath, Jaroslav Matoušek, Jernej Jakše
Izvirni znanstveni članek
Oznake: hmelj;genetika;viroidi;huda viroidna zakrnelost hmelja;izraženost genov;transkriptomska analiza;
Viroids are small non-capsidated, single-stranded, covalently-closed circular noncoding RNA replicons of 239–401 nucleotides that exploit host factors for their replication, and some cause disease in several economically important crop plants, while others appear to be benign. The proposed mechanism ...
Leto: 2019 Vir: Biotehniška fakulteta (UL BF)
Discovery of microRNA-like small rnas in pathogenic plant fungus Verticillium nonalfalfae using high-throughput sequencing and qPCR and RLM-RACE validation
Taja Jeseničnik, Nataša Štajner, Sebastjan Radišek, Ajay Kumar Mishra, Katarina Košmelj, Urban Kunej, Jernej Jakše
Izvirni znanstveni članek
Oznake: Verticillium nonalfalfae;RNA interference;microRNA-like RNAs;fungal pathogen;plant-pathogen interactions;
Verticillium nonalfalfae (V. nonalfalfae) is one of the most problematic hop (Humulus lupulus L.) pathogens, as the highly virulent fungal pathotypes cause severe annual yield losses due to infections of entire hop fields. In recent years, the RNA interference (RNAi) mechanism has become one of the ...
Leto: 2022 Vir: Biotehniška fakulteta (UL BF)
Genome-wide transcriptomic analysis reveals insights into the response to Citrus bark cracking viroid (CBCVd) in hop (Humulus lupulus L.)
Ajay Kumar Mishra, Atul Kumar, Deepti Mishra, Vishnu Sukumari Nath, Jernej Jakše, Tomáš Kocábek, Uday Kumar Killi, Filis Morina, Jaroslav Matoušek
Izvirni znanstveni članek
Oznake: genetske transformacije;viroid razpokanosti skorje agrumov;CBCVd;huda viroidna zakrnelost hmelja;humulus lupulus;hmelj;transkriptomska analiza;različno izraženi geni;
Viroids are smallest known pathogen that consist of non-capsidated, single-stranded non-coding RNA replicons and they exploits host factors for their replication and propagation. The severe stunting disease caused by Citrus bark cracking viroid (CBCVd) is a serious threat, which spreads rapidly with ...
Leto: 2018 Vir: Biotehniška fakulteta (UL BF)
Mapping the gene expression spectrum of mediator subunits in response to viroid infection in plants
Vishnu Sukumari Nath, Ankita Shrestha, Praveen Awasthi, Ajay Kumar Mishra, Tomáš Kocábek, Jaroslav Matoušek, Andrej Sečnik, Jernej Jakše, Sebastjan Radišek, Vipin Hallan
Izvirni znanstveni članek
Oznake: hmelj;genetika;izražanje genov;Nicotiana benthamiana;Nicotiana tabacum;patogeni;viroidi;kvantitativna genetika;kvantitativna reverzna transkripcija;PCR;
The mediator (MED) represents a large, conserved, multi-subunit protein complex that regulates gene expression through interactions with RNA polymerase II and enhancer-bound transcription factors. Expanding research accomplishments suggest the predominant role of plant MED subunits in the regulation ...
Leto: 2020 Vir: Biotehniška fakulteta (UL BF)
Dissection of dynamic transcriptome landscape of leaf, bract, and lupulin gland in hop (Humulus lupulus L.)
Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Praveen Awasthi, Ankita Shrestha, Uday Kumar Killi, Jernej Jakše, Josef Patzak, Karel Krofta, Jaroslav Matoušek
Izvirni znanstveni članek
Oznake: hmelj;genetika;RNA sekvenciranje;sekundarni metaboliti;molekularna biologija;
The hop plant (Humulus lupulus L.) produces several valuable secondary metabolites, such as prenylflavonoid, bitter acids, and essential oils. These compounds are biosynthesized in glandular trichomes (lupulin glands) endowed with pharmacological properties and widely implicated in the beer brewing ...
Leto: 2020 Vir: Biotehniška fakulteta (UL BF)
Integrated proteo-transcriptomic analyses reveal insights into regulation of pollen development stages and dynamics of cellular response to apple fruit crinkle viroid (AFCVd)-infection in Nicotiana tabacum
Ankita Shrestha, Ajay Kumar Mishra, Jaroslav Matoušek, Lenka Steinbachová, David Potěšil, Vishnu Sukumari Nath, Praveen Awasthi, Tomáš Kocábek, Jernej Jakše, Lenka Záveská Drábková, Zbyněk Zdráhal, David Honys, Gerhard Steger
Izvirni znanstveni članek
Oznake: Nicotiana tabacum;tobak;pelod;bolezni rastlin;viroidi;proteomska analiza;transkriptomska analiza;RNA sekvenciranje;degradacija viroidov;
Tobacco (Nicotiana tabacum) pollen is a well-suited model for studying many fundamental biological processes owing to its well-defined and distinct development stages. It is also one of the major agents involved in the transmission of infectious viroids, which is the primary mechanism of viroid path ...
Leto: 2020 Vir: Biotehniška fakulteta (UL BF)
Št. zadetkov: 7
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