Št. zadetkov: 13
Doktorska disertacija
Oznake:
pan-transcriptome;differential networks;multi-omics;time-series;spatial response;multi-way interactions;plant immune signalling;
As sessile organisms, crops interact directly and indirectly with multiple herbivores and pathogens at daily basis, including pests that significantly reduce yields, however, dynamics of crop-pest interactions is relatively poorly understood. One of the world's most important vegetable crops is pota ...
Leto:
2021
Vir:
Biotehniška fakulteta (UL BF)
Izvirni znanstveni članek
Oznake:
biological networks;clustering;gene expression;time series;dynamic network analysis;dynamic data visualisation;web application;multi-conditional datasets;background knowledge;
Background
Progress in high-throughput molecular methods accompanied by more complex experimental designs demands novel data visualisation solutions. To specifically answer the question which parts of the specifical biological system are responding in particular perturbation, integrative approach i ...
Leto:
2018
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
Rotavirus;Norovirus;faecal coliforms;RT-qPCR;methacrylate monolithic columns;enteric virus concentration;
This is the first surveillance study using methacrylate monolithic supports to concentrate environmental coastal water samples, prior to molecular target detection by RT-qPCR. Rotaviruses (RoV) and Noroviruses (NoV) were monitored in a polluted area at the Bay of Koper (Gulf of Trieste, Northern Adr ...
Leto:
2018
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
pISA-tree;ISA model;data management;research data;metadata;
We developed pISA-tree, a straightforward and flexible data management solution for organisation of life science project-associated research data and metadata. pISA-tree was initiated by end-user requirements thus its strong points are practicality and low maintenance cost. It enables on-the-fly cre ...
Leto:
2022
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
obramba rastlin;rastlinski elicitorni peptidi (Pep);zaporedje RNA;genomi;
Background
Rosaceae species are economically highly relevant crops. Their cultivation systems are constrained by phytopathogens causing severe losses. Plants respond to invading pathogens through signaling mechanisms, a component of which are of them being plant elicitor peptides (Peps). Exogenous ...
Leto:
2021
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
bioinformatska analiza;anotacije genskih modelov;pregledovalnik genoma krompirja;model krompirjevega genoma;bioinformatics analysis;plant genome annotation;gene model annotations;Phureja group;GFF files;poTato genome model;UniTato;
Potato (Solanum tuberosum) is the most popular tuber crop and a model organism. A variety of gene models for potato exist, and despite frequent updates, they are not unified. This hinders the comparison of gene models across versions, limits the ability to reuse experimental data without significant ...
Leto:
2024
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
potato virus Y;salicylic acid;hypersensitive response;programmed cell death;callose deposits;necrotic lesion;
Hypersensitive response (HR)-conferred resistance to viral infection restricts the virus spread and is accompanied by the induction of cell death, manifested as the formation of necrotic lesions. While it is known that salicylic acid is the key component in the orchestration of the events restrictin ...
Leto:
2018
Vir:
Nacionalni inštitut za biologijo (NIB)
Carissa Bleker,
Živa Ramšak,
Andras Bittner,
Vid Podpečan,
Maja Zagorščak,
Bernhard Wurzinger,
Špela Baebler,
Marko Petek,
Maja Križnik,
Anže Županič,
Kristina Gruden
Izvirni znanstveni članek
Oznake:
SKM;graf znanja;mreža znanja;vstopna točka;digitalni dvojček rastline;odzivi rastlin na stres;signalizacija rastlin;sistemska biologija;Stress knowledge map;knowledge graph;knowledge network;entry point;plant digital twin;plant stress responses;plant signaling;systems biology;
Stress Knowledge Map (SKM; https://skm.nib.si) is a publicly available resource containing two complementary knowledge graphs that describe the current knowledge of biochemical, signaling, and regulatory molecular interactions in plants: a highly curated model of plant stress signaling (PSS; 543 rea ...
Leto:
2024
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
RNA interferenca (RNAi);dsRNA;utišanje genov;RNAi za zatiranje škodljivcev;analiza preživetja;Leptinotarsa decemlineata (Say);poljski poskus;E coli HT115 (DE3);
Although the reference genome of Solanum tuberosum Group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid Group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders furt ...
Leto:
2020
Vir:
Nacionalni inštitut za biologijo (NIB)
Izvirni znanstveni članek
Oznake:
geminivirus;TYLCV;paradižnik;transkriptom;mikroRNA;tomato;transcriptome;miRNA;
Background Geminiviruses are DNA plant viruses that cause highly damaging diseases affecting crops worldwide. During the infection, geminiviruses hijack cellular processes, suppress plant defenses, and cause a massive reprogramming of the infected cells leading to major changes in the whole plant ho ...
Leto:
2023
Vir:
Nacionalni inštitut za biologijo (NIB)