Št. zadetkov: 19
Doktorska disertacija
Oznake:
klopni meningoencefalitis;genetska raznolikost;sekvenciranje;NGS;mutacije;patogeneza;
Klopni meningoencefalitis (KME), ki ga povzroča virus klopnega meningoencefalitisa (KMEV), je najpomembnejša virusna okužba osrednjega živčevja, ki jo prenašajo klopi v Evropi. Okužba s KMEV lahko variira od asimptomatske, vročinske bolezni, do hude oblike z nevrološkimi znaki, vendar vzroki za tako ...
Leto:
2023
Vir:
Medicinska fakulteta (UL MF)
Izvirni znanstveni članek
Oznake:
bioinformatics workflow;clinical metagenomics;long reads;pathogen detection;short PE reads;
Over the past decade, there have been many improvements in the field of metagenomics, including sequencing technologies, advances in bioinformatics and the development of reference databases, but a one-size-fits-all sequencing and bioinformatics pipeline does not yet seem achievable. In this study, ...
Leto:
2024
Vir:
Medicinska fakulteta (UL MF)
Izvirni znanstveni članek
Oznake:
tick-borne encephalitis virus;whole genome sequencing;metagenomics;
The clinical presentation of tick-borne encephalitis virus (TBEV) infection varies from asymptomatic to severe meningoencephalitis or meningoencephalomyelitis. The TBEV subtype has been suggested as one of the most important risk factors for disease severity, but TBEV genetic characterization is dif ...
Leto:
2022
Vir:
Medicinska fakulteta (UL MF)
Izvirni znanstveni članek
Oznake:
West Nile virus;mosquitoes;Slovenia;
West Nile virus (WNV) is a flavivirus transmitted by mosquitoes. Birds are the reservoir for the virus; humans, horses and other mammals are dead-end hosts. Infections caused by WNV in humans can vary from asymptomatic infections to West Nile fever (WNF) or West Nile neuroinvasive disease (WNND). In ...
Leto:
2020
Vir:
Medicinska fakulteta (UL MF)
Izvirni znanstveni članek
Oznake:
Dirofilaria repens;Setaria labiatopapillosa;Setaria tundra;mosquito;Slovenia;vector;xenoonitoring;
Background: Dirofilaria repens infections have already been reported in both dogs and humans in Slovenia. Xenomonitoring of mosquitoes for filarioid helminths has been used in many studies across Europe to analyze the autochthonous occurrence of filarioids. The aim of this study was to identify pote ...
Leto:
2026
Vir:
Medicinska fakulteta (UL MF)
Jan Slunečko,
Rok Kogoj,
Samo Zakotnik,
Alen Suljič,
Nataša Knap,
Martin Bosilj,
Franc Strle,
Tatjana Avšič-Županc,
Petra Bogovič,
Petra Bogovič,
Miša Korva,
Miša Korva
Izvirni znanstveni članek
Oznake:
mNGS;clinical metagenomics;molecular diagnostics;universal pathogen detection;enhanced RNA virus detection;
Introduction: Blood culture is the cornerstone of microbiological diagnostics for patients with acute undifferentiated fever and no obvious localization of infection; however, up to 50% of cases remain undiagnosed. Infections caused by arboviruses, fastidious or even uncultivable bacteria, or parasi ...
Leto:
2025
Vir:
Medicinska fakulteta (UL MF)
Patricija Pozvek,
Miša Korva,
Samo Zakotnik,
Tea Knapič,
Nataša Knap,
Katja Adam,
Katarina Resman Rus,
Gašper Grubelnik,
Tomi Trilar,
Vladimir Ivović,
Tatjana Avšič-Županc
Izvirni znanstveni članek
Oznake:
arboviruses;Genotype IV;mosquitoes;NGS;phylogenetic analysis;Sindbis virus;
Mosquitoes play a crucial role as vectors of disease pathogens and are among the most socioeconomically important animals in the world. Medically important arboviruses include the Sindbis virus (SINV), which causes chills, skin rashes, and joint pain. Endemic in northern Europe, SINV has been increa ...
Leto:
2026
Vir:
Fakulteta za matematiko, naravoslovje in informacijske tehnologije Koper (UP FAMNIT)
Alen Suljič,
Tomaž Mark Zorec,
Samo Zakotnik,
Doroteja Vlaj,
Rok Kogoj,
Nataša Knap,
Miroslav Petrovec,
Mario Poljak,
Tatjana Avšič-Županc,
Miša Korva,
Miša Korva
Izvirni znanstveni članek
Oznake:
COVID-19;SARS-CoV-2;complete-genome sequencing;molecular surveillance;next-generation sequencing;spike gene;
The emergence and rapid spread of SARS-CoV-2 prompted the global community to identify innovative approaches to diagnose infection and sequence the viral genome because at several points in the pandemic positive case numbers exceeded the laboratory capacity to characterize sufficient samples to adeq ...
Leto:
2024
Vir:
Medicinska fakulteta (UL MF)
Patricija Pozvek,
Miša Korva,
Samo Zakotnik,
Tea Knapič,
Katja Kalan,
Katarina Resman Rus,
Gašper Grubelnik,
Tomi Trilar,
Vladimir Ivović,
Tatjana Avšič-Županc,
Nataša Knap
Izvirni znanstveni članek
Oznake:
arbovirusi;genotip IV;komarji;NGS;filogenetska analiza;virus Sindbis;arboviruses;Genotype IV;mosquitoes;phylogenetic analysis;Sindbis virus;
Mosquitoes play a crucial role as vectors of disease pathogens and are among the most socioeconomically important animals in the world. Medically important arboviruses include the Sindbis virus (SINV), which causes chills, skin rashes, and joint pain. Endemic in northern Europe, SINV has been increa ...
Leto:
2026
Vir:
Medicinska fakulteta (UL MF)
Joško Račnik,
Ana Kočevar,
Brigita Slavec,
Miša Korva,
Katarina Resman Rus,
Samo Zakotnik,
Tomaž Mark Zorec,
Mario Poljak,
Milan Matko,
Olga Zorman-Rojs,
Tatjana Avšič-Županc
Izvirni znanstveni članek
Oznake:
Zoonoses;disease transmission;SARS-COV-2;human;ferret;
Abstract
We report a case of natural infection with severe acute respiratory syndrome coronavirus 2 transmitted from an owner to a pet ferret in the same household in Slovenia. The ferret had onset of gastroenteritis with severe dehydration. Whole-genome sequencing of the viruses isolated from ...
Leto:
2021
Vir:
Veterinarska fakulteta (UL VF)