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Integration of gene expression data with causal networks
Mihael Rajh, Tomaž Curk, Carissa Bleker
Magistrsko delo
Oznake: bioinformatics;casual reasoning;gene expression;computer science;master's thesis;
With the increased availability of large gene expression datasets comes an increased need for informed methods of data analysis. One class of recent methods involves the use of causal biological networks, which depict causal relationships between molecular events inside the cell. These networks offe ...
Leto: 2023 Vir: Fakulteta za računalništvo in informatiko (UL FRI)
Evidence-based unification of potato gene models with the UniTato collaborative genome browser
Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Francesca Nolte, Mojca Juteršek, Živa Ramšak, Kristina Gruden, Marko Petek
Izvirni znanstveni članek
Oznake: bioinformatska analiza;anotacije genskih modelov;pregledovalnik genoma krompirja;model krompirjevega genoma;bioinformatics analysis;plant genome annotation;gene model annotations;Phureja group;GFF files;poTato genome model;UniTato;
Potato (Solanum tuberosum) is the most popular tuber crop and a model organism. A variety of gene models for potato exist, and despite frequent updates, they are not unified. This hinders the comparison of gene models across versions, limits the ability to reuse experimental data without significant ...
Leto: 2024 Vir: Nacionalni inštitut za biologijo (NIB)
Stress knowledge map
Carissa Bleker, Živa Ramšak, Andras Bittner, Vid Podpečan, Maja Zagorščak, Bernhard Wurzinger, Špela Baebler, Marko Petek, Maja Križnik, Anže Županič, Kristina Gruden
Izvirni znanstveni članek
Oznake: SKM;graf znanja;mreža znanja;vstopna točka;digitalni dvojček rastline;odzivi rastlin na stres;signalizacija rastlin;sistemska biologija;Stress knowledge map;knowledge graph;knowledge network;entry point;plant digital twin;plant stress responses;plant signaling;systems biology;
Stress Knowledge Map (SKM; https://skm.nib.si) is a publicly available resource containing two complementary knowledge graphs that describe the current knowledge of biochemical, signaling, and regulatory molecular interactions in plants: a highly curated model of plant stress signaling (PSS; 543 rea ...
Leto: 2024 Vir: Nacionalni inštitut za biologijo (NIB)
Št. zadetkov: 3
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