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Št. zadetkov: 4
Transfer learning for prediction of transcription start sites across different plant species
David Miškić, Tomaž Curk, Jan Zrimec
Magistrsko delo
Oznake: transcription start site;polymerase;bioinformatics;transformer;computer science;master's thesis;
Transcription start site (TSS) prediction is a classification problem at the intersection of machine learning and laboratory gene expression measurement methods. The site is significant as it represents the location where the first nucleotide is transcribed by RNA polymerase and can help characteriz ...
Leto: 2023 Vir: Fakulteta za računalništvo in informatiko (UL FRI)
Deep learning of tissue-specific gene expression from DNA sequences
Uroš Polanc, Tomaž Curk, Jan Zrimec
Magistrsko delo
Oznake: bioinformatics;convolutional neural network;DNA;DNABERT;gene expression;machine learning;sequence motifs;mRNA;predictive models;regulatory mechanisms;tissue-specific gene expression;tissue-specificity;computer science;master's thesis;
Predicting tissue-specific gene expression is a crucial task in understanding the complex regulatory mechanisms governing gene expression. In this research, we employed three distinct models, two convolutional neural networks (CNNs) and DNABERT, to explore predictive models for tissue-specific gene ...
Leto: 2023 Vir: Fakulteta za računalništvo in informatiko (UL FRI)
ǂA ǂmini-TGA protein modulates gene expression through heterogeneous association with transcription factors
Špela Tomaž, Marko Petek, Tjaša Lukan, Karmen Pogačar, Katja Stare, Erica Teixeira Prates, Daniel A. Jacobson, Jan Zrimec, Gregor Bajc, Matej Butala, Maruša Pompe Novak, Ajda Taler-Verčič, Aleksandra Usenik, Dušan Turk, Anna Coll Rius, Kristina Gruden
Izvirni znanstveni članek
Oznake: proteini mini-TGA;rastlinski imunski odziv;transkripcijski faktorji TGA;virus krompirja Y;
TGA (TGACG-binding) transcription factors, which bind their target DNA through a conserved basic region leucine zipper (bZIP) domain, are vital regulators of gene expression in salicylic acid (SA)-mediated plant immunity. Here, we investigated the role of StTGA2.1, a potato (Solanum tuberosum) TGA l ...
Leto: 2022 Vir: Biotehniška fakulteta (UL BF)
Prva okrogla miza / First Round-Table Discussion
Alexis Zrimec , Jan Kuever , Eörs Szathmáry , Volker Storch , Peter Trontelj
Video in druga učna gradiva
Oznake: events
Leto: 2009 Vir: videolectures.net
Št. zadetkov: 4
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