Št. zadetkov: 18
Druge monografije in druga zaključena dela
Oznake:
Leto:
2026
Vir:
Nacionalni inštitut za biologijo (NIB)
Raziskovalni podatki
Oznake:
transkriptomski podatki;bioinformatika;arabidopsis;transcriptomic data;bioinformatics;Arabidopsis;
A prerequisite to understanding how an organism functions and responds to its environment is to determine which gene expression patterns are associated with a specific tissue type or perturbation response. Neural network-based methods can provide subsets of highly informative genes for such associat ...
Leto:
2026
Vir:
Nacionalni inštitut za biologijo (NIB)
Magistrsko delo
Oznake:
transcription start site;polymerase;bioinformatics;transformer;computer science;master's thesis;
Transcription start site (TSS) prediction is a classification problem at the intersection of machine learning and laboratory gene expression measurement methods. The site is significant as it represents the location where the first nucleotide is transcribed by RNA polymerase and can help characteriz ...
Leto:
2023
Vir:
Fakulteta za računalništvo in informatiko (UL FRI)
Magistrsko delo
Oznake:
bioinformatics;convolutional neural network;DNA;DNABERT;gene expression;machine learning;sequence motifs;mRNA;predictive models;regulatory mechanisms;tissue-specific gene expression;tissue-specificity;computer science;master's thesis;
Predicting tissue-specific gene expression is a crucial task in understanding the complex regulatory mechanisms governing gene expression. In this research, we employed three distinct models, two convolutional neural networks (CNNs) and DNABERT, to explore predictive models for tissue-specific gene ...
Leto:
2023
Vir:
Fakulteta za računalništvo in informatiko (UL FRI)
Kratki znanstveni prispevek
Oznake:
napovedovanje izrazanja genov;bioinformatika;globoko ucenje;regulatorna genomika;gene expression prediction;bioinformatics;deep learning;regulatory genomics;
Advanced machine learning (ML) algorithms produce highly accurate models of gene expression, uncovering novel regulatory features in nucleotide sequences involving multiple cis-regulatory regions across whole genes and structural properties. These broaden our understanding of gene regulation and poi ...
Leto:
2022
Vir:
Nacionalni inštitut za biologijo (NIB)
Magistrsko delo
Oznake:
large genomic models;state space models;explainable AI;regulatory genomics;deep learning;environmental adaptation;computer science;master's thesis;
Understanding the link between plant environmental adaptation and genotype is a central challenge in plant biotechnology and agronomy. Here, we explore whether incorporating local DNA sequence context with genotype data improves modeling of plant environmental adaptation compared to traditional meth ...
Leto:
2025
Vir:
Fakulteta za računalništvo in informatiko (UL FRI)
Magistrsko delo
Oznake:
graph neural networks;link prediction;molecular interaction networks;Arabidopsis thaliana;batch effect correction;variational autoencoder;scArches;explainable artificial intelligence;CKN;
Plant molecular biology leans on curated interaction networks such as the Comprehensive Knowledge Network (CKN) of Arabidopsis thaliana, yet it is rarely tested whether building such a network into a learning system helps at all, and if so, where. This thesis integrates CKN with public expression da ...
Leto:
2026
Vir:
Fakulteta za matematiko in fiziko (UL FMF)
Izvirni znanstveni članek
Oznake:
bioinformatika;okoljska mikrobiologija;mikrobna ekologija;onesnaženje s plastiko;
Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA ...
Leto:
2021
Vir:
Nacionalni inštitut za biologijo (NIB)
Video in druga učna gradiva
Oznake:
podatki;ravnanje s podatki;ravnanje z raziskovalnimi podatki;raziskovalni podatki;odprta znanost;programska orodja;Python;R;
Predstavitev programskih orodij Python in R
Leto:
2024
Vir:
Nacionalni inštitut za biologijo (NIB)
Pregledni znanstveni članek
Oznake:
lignocelulozna hidroliza;kvasovke;podatkovno rudarjenje;bioinformatika;
The use of renewable plant biomass, lignocellulose, to produce biofuels and biochemicals using microbial cell factories plays a fundamental role in the future bioeconomy. The development of cell factories capable of efficiently fermenting complex biomass streams will improve the cost-effectiveness o ...
Leto:
2022
Vir:
Nacionalni inštitut za biologijo (NIB)