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Št. zadetkov: 5
Evidence-based unification of potato gene models with the UniTato collaborative genome browser
Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Francesca Nolte, Mojca Juteršek, Živa Ramšak, Kristina Gruden, Marko Petek
Izvirni znanstveni članek
Oznake: bioinformatska analiza;anotacije genskih modelov;pregledovalnik genoma krompirja;model krompirjevega genoma;bioinformatics analysis;plant genome annotation;gene model annotations;Phureja group;GFF files;poTato genome model;UniTato;
Potato (Solanum tuberosum) is the most popular tuber crop and a model organism. A variety of gene models for potato exist, and despite frequent updates, they are not unified. This hinders the comparison of gene models across versions, limits the ability to reuse experimental data without significant ...
Leto: 2024 Vir: Nacionalni inštitut za biologijo (NIB)
CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues
Anna Vathrakokoili Pournara, Zhichao Miao, Ozgur Yilimaz Beker, Nadja Francesca Nolte, Alvis Brazma, Irene Papatheodorou
Izvirni znanstveni članek
Oznake: RNA-Seq posamezne celice;dekonvolucija celičnih tipov;ocena;
Motivation Cell-type deconvolution methods aim to infer cell composition from bulk transcriptomic data. The proliferation of developed methods coupled with inconsistent results obtained in many cases, highlights the pressing need for guidance in the selection of appropriate methods. Additionally, th ...
Leto: 2024 Vir: Nacionalni inštitut za biologijo (NIB)
Orodja za delo z delotoki
Marko Vidak, Bojan Kverh, Polonca Ferk, Branimir Leskošek, Maja Zagorščak, Nadja Francesca Nolte, Carissa Bleker, Marko Petek, Anže Županič
Druge monografije in druga zaključena dela
Oznake: odprti podatki;odprta znanost;delo z delotoki;projekt Spoznaj;okolje Galaxy;raziskovalni podatki;uporabljanje podatkov;
Orodja za delo z delotoki
Leto: 2024 Vir: Repozitorij Univerze v Ljubljani (RUL)
CRISPR/dCas9-based systems: mechanisms and applications in plant sciences
Chou Khai Soong Karlson, Siti Nurfadhlina Mohd-Noor, Nadja Francesca Nolte, Boon Chin Tan
Pregledni znanstveni članek
Oznake: CRISPR interference;CRISPR/dCas9 system;crop improvement;gene silencing;RNAi;transcriptional regulation;
RNA-guided genomic transcriptional regulation tools, namely clustered regularly interspaced short palindromic repeats interference (CRISPRi) and CRISPR-mediated gene activation (CRISPRa), are a powerful technology for gene functional studies. Deriving from the CRISPR/Cas9 system, both systems consis ...
Leto: 2021 Vir: Nacionalni inštitut za biologijo (NIB)
White paper: standards for handling and analyzing plant pan-genomes
Marc C. Heuermann, Pedro M. Barros, Sebastian Beier, Tim Godec, Kristina Gruden, Nadja Francesca Nolte, Marko Petek, Maja Zagorščak
Pregledni znanstveni članek
Oznake: rastlinski pangenom;standardizacija;kontrola kvalitete;ontologije;metapodatki;plant pan-genome;white paper;standards;quality control;
Plant pan-genomes, which aggregate genomic sequences and annotations from multiple individuals of a species, have emerged as transformative tools for understanding genetic diversity, adaptation, and evolutionary dynamics. Super-pan-genomes, extending across species boundaries, further enable compara ...
Leto: 2025 Vir: Nacionalni inštitut za biologijo (NIB)
Št. zadetkov: 5
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